plans.datasets.spatial

Handle spatial datasets (maps).

Overview

# todo [major docstring improvement] – overview Mauris gravida ex quam, in porttitor lacus lobortis vitae. In a lacinia nisl. Pellentesque habitant morbi tristique senectus et netus et malesuada fames ac turpis egestas.

Example

# todo [major docstring improvement] – examples Lorem ipsum dolor sit amet, consectetur adipiscing elit. Nulla mollis tincidunt erat eget iaculis. Mauris gravida ex quam, in porttitor lacus lobortis vitae. In a lacinia nisl.

import numpy as np
print("Hello World!")

Mauris gravida ex quam, in porttitor lacus lobortis vitae. In a lacinia nisl. Mauris gravida ex quam, in porttitor lacus lobortis vitae. In a lacinia nisl.

Classes

AOI([name])	AOI map dataset
AOICollection(name)	A QualiRasterCollection` for holding AOI maps
Basins([name])	Basins map dataset
DTO([name])	Distance to outlet raster map dataset.
EBA(name, datetime[, q_a])	Equivalent Biodiversity Area raster map dataset.
ET24h(name, date)	ET 24h raster map dataset.
ETSeries(name)
Elevation([name])	Elevation (DEM) raster map dataset.
FAC(name)	Flow Accumulation raster map dataset.
HAND([name])	HAND raster map dataset.
HTWI([name])	HTWI (HAND-TWI) raster map dataset.
HabDegradation(name, datetime)	Habitat Degradation raster map dataset.
HabQuality(name, datetime)	Habitat Quality raster map dataset.
Hydrology(name, varalias, datetime)	Primitive hydrology raster map dataset.
LDD([name])	LDD - Local Drain Direction map dataset
LULC(name, datetime)	Land Use and Land Cover map dataset
LULCChange(name, date_start, date_end, name_lulc)	Land Use and Land Cover Change map dataset
LULCSeries(name)	A QualiRasterSeries for holding Land Use and Land Cover maps
Lithology([name])	Lithology map dataset
NDVI(name, datetime)	NDVI raster map dataset.
NDVISeries(name)
Slope([name])	Slope raster map dataset.
Soils([name])	Soils map dataset
TWI([name])	TWI raster map dataset.

class plans.datasets.spatial.Elevation(name='DEM')

Bases: SciRaster

Elevation (DEM) raster map dataset.

__init__(name='DEM')

Initialize dataset

Parameters:

name (str) – name of map

get_tpi(cell_radius)

get_tpi_landforms(radius_micro, radius_macro)

class plans.datasets.spatial.Slope(name='Slope')

Bases: SciRaster

Slope raster map dataset.

__init__(name='Slope')

Initialize dataset

Parameters:

name (str) – name of map

class plans.datasets.spatial.TWI(name='TWI')

Bases: SciRaster

TWI raster map dataset.

__init__(name='TWI')

Initialize dataset

Parameters:

name (str) – name of map

class plans.datasets.spatial.HTWI(name='HTWI')

Bases: SciRaster

HTWI (HAND-TWI) raster map dataset.

__init__(name='HTWI')

Initialize dataset

Parameters:

name (str) – name of map

class plans.datasets.spatial.HAND(name='HAND')

Bases: SciRaster

HAND raster map dataset.

__init__(name='HAND')

Initialize dataset

Parameters:

name (str) – name of map

class plans.datasets.spatial.DTO(name='DTO')

Bases: SciRaster

Distance to outlet raster map dataset.

__init__(name='DTO')

Initialize dataset

Parameters:

name (str) – name of map

class plans.datasets.spatial.FAC(name)

Bases: SciRaster

Flow Accumulation raster map dataset.

__init__(name)

Initialize dataset.

Parameters:

name (str) – name of map

class plans.datasets.spatial.NDVI(name, datetime)

Bases: SciRaster

NDVI raster map dataset.

__init__(name, datetime)

Initialize dataset.

Parameters:

• name (str) – name of map

• datetime (str) – date of map in yyyy-mm-dd

set_data(grid)

Set the data grid for the raster object. This function allows setting the data grid for the raster object. The incoming grid should be a NumPy array.

Parameters:

grid (numpy.ndarray) – The data grid to be set for the raster.

Notes

• The function overwrites the existing data grid in the raster object with the incoming grid, ensuring that the data type matches the raster’s dtype.

• Nodata values are masked after setting the grid.

class plans.datasets.spatial.ET24h(name, date)

Bases: SciRaster

ET 24h raster map dataset.

__init__(name, date)

Initialize dataset.

Parameters:

• name (str) – name of map

• date (str) – date of map in yyyy-mm-dd

set_data(grid)

Set the data grid for the raster object. This function allows setting the data grid for the raster object. The incoming grid should be a NumPy array.

Parameters:

grid (numpy.ndarray) – The data grid to be set for the raster.

Notes

• The function overwrites the existing data grid in the raster object with the incoming grid, ensuring that the data type matches the raster’s dtype.

• Nodata values are masked after setting the grid.

class plans.datasets.spatial.Hydrology(name, varalias, datetime)

Bases: SciRaster

Primitive hydrology raster map dataset.

__init__(name, varalias, datetime)

Initialize dataset

Parameters:

name (str) – name of map

_set_cmaps()

Sets predefined colormaps for different types of scientific data.

Returns:

None

Return type:

None

_set_vars()

class plans.datasets.spatial.HabQuality(name, datetime)

Bases: SciRaster

Habitat Quality raster map dataset.

__init__(name, datetime)

Initialize dataset.

Parameters:

• name (str) – name of map

• datetime (str) – date of map in yyyy-mm-dd

get_biodiversity_area(b_a: float = 1.0) → Raster

Get a raster of Biodiversity Area :param b_a: model parameter :type b_a: float :return: Raster object of biodiversity area :rtype: Raster

class plans.datasets.spatial.HabDegradation(name, datetime)

Bases: SciRaster

Habitat Degradation raster map dataset.

__init__(name, datetime)

Initialize dataset.

Parameters:

• name (str) – name of map

• datetime (str) – date of map in yyyy-mm-dd

class plans.datasets.spatial.EBA(name, datetime, q_a=1.0)

Bases: SciRaster

Equivalent Biodiversity Area raster map dataset.

__init__(name, datetime, q_a=1.0)

Initialize dataset.

Parameters:

• name (str) – name of map

• datetime (str) – date of map in yyyy-mm-dd

• q_a (float) – habitat quality reference

set_data(grid)

Set the data grid for the raster object. This function allows setting the data grid for the raster object. The incoming grid should be a NumPy array.

Parameters:

grid (numpy.ndarray) – The data grid to be set for the raster.

Notes

• The function overwrites the existing data grid in the raster object with the incoming grid, ensuring that the data type matches the raster’s dtype.

• Nodata values are masked after setting the grid.

class plans.datasets.spatial.Basins(name='BasinsMap')

Bases: QualiRaster

Basins map dataset

__init__(name='BasinsMap')

static get_upstream_ids(basin_id, topology_df, visited=None)

Recursive utility function for listing all upstream basins

Parameters:

• basin_id (int) – basin id to start

• topology_df (pandas.DataFrame) – dataframe with topology. expected to have Id and Downstream_Id columns

• visited (list or None) – visited id (default=None)

Returns:

upstream ids

Return type:

list

get_basin_aoi(basin_id)

class plans.datasets.spatial.LULC(name, datetime)

Bases: QualiRaster

Land Use and Land Cover map dataset

__init__(name, datetime)

Initialize LULC` map

Parameters:

• name (str) – name of map

• datetime (str) – date of map in yyyy-mm-dd

class plans.datasets.spatial.LULCChange(name, date_start, date_end, name_lulc)

Bases: QualiRaster

Land Use and Land Cover Change map dataset

__init__(name, date_start, date_end, name_lulc)

Initialize LULCChange` map

Parameters:

• name (str) – name of map

• date_start (str) – date of map in yyyy-mm-dd

• date_end (str) – date of map in yyyy-mm-dd

• name_lulc (str) – name of lulc incoming map

class plans.datasets.spatial.Lithology(name='LitoMap')

Bases: QualiRaster

Lithology map dataset

__init__(name='LitoMap')

Initialize Lithology` map

Parameters:

name

class plans.datasets.spatial.Soils(name='SoilsMap')

Bases: QualiRaster

Soils map dataset

__init__(name='SoilsMap')

set_hydro_soils(map_lito, map_hand, map_slope, n_hand=2, n_slope=10)

Set hydrological soils based on lithology, Hand and Slope maps.

Parameters:

• map_lito (datasets.Lithology) – Lithology raster map

• map_hand (datasets.HAND) – HAND raster map

• map_slope (datasets.Slope) – Slope raster map

• n_hand (float) – HAND threshold for alluvial definition

• n_slope (float) – Slope threshold for colluvial definition

Returns:

None

Return type:

None

class plans.datasets.spatial.AOI(name='AOIMap')

Bases: QualiHard

AOI map dataset

__init__(name='AOIMap')

update()

Refresh all mutable attributes based on data (includins paths). Expected to be incremented downstream.

Returns:

None

Return type:

None

get_table()

Retrieves a sample DataFrame representing an AOI classification table.

Returns:

A DataFrame with sample AOI classification data.

Return type:

pandas.DataFrame

set_area()

get_metadata()

Get a dictionary with object metadata. Expected to increment superior methods.

Note

Metadata does not necessarily inclue all object attributes.

Returns:

dictionary with all metadata

Return type:

dict

view(show=True, folder='./output', filename=None, dpi=150, fig_format='jpg')

Plot a basic pannel of raster map.

Parameters:

• show (bool) – boolean to show plot instead of saving, defaults to False

• folder (str) – path to output folder, defaults to ./output

• filename (str) – name of file, defaults to None

• dpi (int) – image resolution, defaults to 96

• fig_format (str) – image fig_format (ex: png or jpg). Default jpg

class plans.datasets.spatial.LDD(name='LDDMap')

Bases: QualiHard

LDD - Local Drain Direction map dataset

LDD uses wbt convention derived from the WhiteboxTool.

wbt convention

64	128	1
32	0	2
16	8	4

__init__(name='LDDMap')

get_table()

Retrieves a DataFrame representing a classification table.

Returns:

A DataFrame with classification data.

Return type:

pandas.DataFrame

class plans.datasets.spatial.NDVISeries(name)

Bases: RasterSeries

__init__(name)

Deploy RasterSeries

Parameters:

• name (str) – RasterSeries.name` name attribute

• varname (str) – Raster.varname` variable name attribute, defaults to None

• varalias (str) – Raster.varalias` variable alias attribute, defaults to None

• units (str) – Raster.units` units attribute, defaults to None

load_data(name, datetime, file_data, prj_file)

Load a NDVI` object from a raster file.

Parameters:

• name (str) – name attribute

• datetime (str) – Raster.date` date attribute, defaults to None

• file_data (str) – path to .asc raster file

• prj_file (str) – path to .prj projection file

Returns:

None

Return type:

None

class plans.datasets.spatial.ETSeries(name)

Bases: RasterSeries

__init__(name)

Deploy RasterSeries

Parameters:

• name (str) – RasterSeries.name` name attribute

• varname (str) – Raster.varname` variable name attribute, defaults to None

• varalias (str) – Raster.varalias` variable alias attribute, defaults to None

• units (str) – Raster.units` units attribute, defaults to None

load_data(name, datetime, file_data, prj_file)

Load a ET24h` object from a raster file.

Parameters:

• name (str) – name attribute

• datetime (str) – datetime attribute, defaults to None

• file_data (str) – path to raster file

• prj_file (str) – path to projection file

Returns:

None

Return type:

None

class plans.datasets.spatial.AOICollection(name)

Bases: QualiRasterCollection

A QualiRasterCollection` for holding AOI maps

__init__(name)

Deploy Qualitative Raster Series

Parameters:

• name (str) – RasterSeries.name` name attribute

• varname (str) – Raster.varname` variable name attribute, defaults to None

• varalias (str) – Raster.varalias` variable alias attribute, defaults to None

load_data(name, file_data, file_prj=None)

Load a AOI` object from raster file.

Parameters:

• name (str) – name attribute

• file_data (str) – path to raster file

• file_prj (str) – path to projection file

• file_table (str) – path to table file

Returns:

None

Return type:

None

class plans.datasets.spatial.LULCSeries(name)

Bases: QualiRasterSeries

A QualiRasterSeries for holding Land Use and Land Cover maps

__init__(name)

Deploy Qualitative Raster Series

Parameters:

• name (str) – RasterSeries.name` name attribute

• varname (str) – Raster.varname variable name attribute, defaults to None

• varalias (str) – Raster.varalias variable alias attribute, defaults to None

load_data(name, datetime, file_data, file_prj=None, file_table=None)

Load a LULC` object from raster file.

Parameters:

• name (str) – name attribute

• datetime (str) – date attribute

• file_data (str) – path to raster file

• file_prj (str) – path to projection file

• file_table (str) – path to table file

Returns:

None

Return type:

None

get_lulcc(date_start, date_end, by_lulc_id)

Get the LULCChange` of a given time interval and LULC class Id

Parameters:

• date_start (str) – start date of time interval

• date_end (str) – end date of time interval

• by_lulc_id (int) – LULC class Id

Returns:

map of LULC Change

Return type:

LULCChange

get_lulcc_series(by_lulc_id)

Get the QualiRasterSeries of LULC Change for the entire LULC series for a given LULC Id

Parameters:

by_lulc_id (int) – LULC class Id

Returns:

Series of LULC Change

Return type:

QualiRasterSeries

get_conversion_matrix(date_start, date_end, talk=False)

Compute the conversion matrix, expansion matrix and retraction matrix for a given interval

Parameters:

• date_start (str) – start date of time interval

• date_end (str) – end date of time interval

• talk (bool) – option for printing messages

Returns:

dict of outputs

Return type:

dict